PCORI funded the development of PCORnet®, the National Patient-Centered Clinical Research Network, to make research faster, easier, and less costly to conduct. PCORnet is made up of Partner Networks of healthcare systems, patients and communities, and health plans that harness the power of large amounts of health data.
PCORI supports brief, descriptive projects to assess the feasibility of conducting research using data gathered and shared securely through PCORnet. This project is one of several designed to test the network while addressing priorities identified by PCORI and its stakeholders.
To use PCORnet to document the patterns of use of molecular tests and molecular targeted cancer therapies for patients with solid tumors and to test the capacity of PCORnet to describe cancer pathology, test results, cancer treatment, and outcomes
|Retrospective descriptive analysis project
|Data Sources and Data Sets
|Records of patients with a single primary solid tumor diagnosed between 2013 and 2016 from 11 PCORnet sites
|Review of EHR, tumor registry, and Medicare claims data
Aim 1. Frequency of molecular tests and associated cancer treatment
Aim 2. Concordance between molecular test results and associated treatment
Aim 3. Completeness of data on molecular tests, treatments, and outcomes within EHRs relative to Medicare claims data
Aim 4. Capacity of networks to conduct pragmatic outcomes research related to molecular testing in cancer
The project included tumor registry and electronic health record (EHR) data from 86,154 patients linked using the PCORnet common data model (CDM). The CDM organizes data into a standard structure for use by researchers. The patients had single solid tumors and received care from 1 of 11 research sites in 10 states between 2013 and 2016.
The project had four aims:
Aim 1. The project team examined how often common molecular tests and molecular targeted therapies to treat patients with cancer are recorded in the CDM.
Aim 2. In a subset of patients who had molecular tumor tests for colorectal cancer at two PCORnet research sites, the research team reviewed hospital tumor registry and EHR data to determine whether molecular targeted therapy was in concordance with molecular tests.
Aim 3. In a subset of patients with breast cancer, the project team assessed the completeness of information about molecular tumor tests and molecular-targeted therapy within the PCORnet CDM data by comparing CDM data plus Medicare claims data with CDM data only and Medicare data only.
Aim 4. Based on results from aims 1–3, the project team described how well the CDM captured diagnoses, therapies, tests, test results, and treatment outcomes for research purposes.
- Molecular tumor tests. The prevalence of having any molecular tumor testing varied by tumor location, ranging from 26% for endocrine tumors to 73% for breast tumors.
- Molecular targeted therapy. Among patients with cancer, 5% had molecular therapy. Use of this treatment was lowest among patients ages 60 years and older and highest for patients with breast, lung, oral cavity, and pharynx cancer.
Aim 2. Between 16% and 18.7% of patients with colorectal cancer at the two sites received molecular targeted therapy. All 36 patients that received molecular targeted therapy received the therapy concordant with their molecular tumor test results.
Aim 3. CDM data plus Medicare claims data showed that 60% of patients had molecular tumor tests compared with 49% of patients when using CDM data only. CDM data plus Medicare claims data showed that 6.7% of patients had molecular targeted therapy compared with 4.4% of patients when using CDM data only.
Aim 4. The project team successfully and rapidly obtained CDM and tumor registry data from many sites in multiple data networks.
The CDM data rely on standardized codes that may not be specific enough to identify molecular tests and molecular targeted therapy. The project team had to review underlying patient EHRs to retrieve these data.
Conclusions and Relevance
The project team linked CDM data with both tumor registry and EHR data and used these combined data to describe use of molecular tumor tests and molecular targeted therapy. The team used the combined data to investigate concordance between molecular tumor test results and the targeted therapy patients received. The team also demonstrated the importance of linking Medicare claims data to CDM data to ensure data completeness.
Future Research Needs
Future projects could employ natural language processing or structured pathology data to improve the identification of specific molecular tests and targeted treatments.